Package: AmpGram
Type: Package
Title: Prediction of Antimicrobial Peptides
Version: 1.1
LazyData: TRUE
Date: 2022-03-01
Authors@R: c(person("Michal", "Burdukiewicz", 
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"),
           role = c("cre", "aut")),
           person("Katarzyna", "Sidorczuk", 
           email = "sidorczuk.katarzyna17@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0001-6576-9054")),
           person("Filip", "Pietluch", 
           email = "fpietluch@gmail.com",
           role = c("ctb"),
           comment = c(ORCID = "0000-0001-6218-9804")),
           person("Dominik", "Rafacz", 
           email = "dominikrafacz@gmail.com",
           comment = c(ORCID = "0000-0003-0925-1909"),
           role = c("aut")),
           person("Stefan", "Roediger", 
           email = "stefan.roediger@b-tu.de", 
           comment = c(ORCID = "0000-0002-1441-6512"),
           role = c("ctb")),
           person("Jaroslaw", "Chilimoniuk", 
           email = "jaroslaw.chilimoniuk@gmail.com", 
           comment = c(ORCID = "0000-0001-5467-018X"),
           role = c("ctb")))
Description: Predicts antimicrobial peptides using random forests
        trained on the n-gram encoded peptides (10.3390/ijms21124310).
        The implemented algorithm can be accessed from both the command
        line and shiny-based GUI. The AmpGram model is too large for
        CRAN and it has to be downloaded separately from the
        repository: <https://github.com/michbur/AmpGramModel>.
License: GPL-3
URL: https://github.com/michbur/AmpGram
BugReports: https://github.com/michbur/AmpGram/issues
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: biogram, devtools, pbapply, ranger, shiny, stringi
Suggests: DT, ggplot2, pander, rmarkdown, shinythemes, spelling
RoxygenNote: 7.1.0
Language: en-US
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git libgmp3-dev make libharfbuzz-dev libgit2-dev
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libwebp-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://michbur.r-universe.dev
Date/Publication: 2022-02-28 21:10:46 UTC
RemoteUrl: https://github.com/michbur/ampgram
RemoteRef: HEAD
RemoteSha: b04c301e15bf4dad0ea61675e5d0defae509cca2
NeedsCompilation: no
Packaged: 2026-06-23 08:18:13 UTC; root
Author: Michal Burdukiewicz [cre, aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Katarzyna Sidorczuk [ctb] (ORCID:
    <https://orcid.org/0000-0001-6576-9054>),
  Filip Pietluch [ctb] (ORCID: <https://orcid.org/0000-0001-6218-9804>),
  Dominik Rafacz [aut] (ORCID: <https://orcid.org/0000-0003-0925-1909>),
  Stefan Roediger [ctb] (ORCID: <https://orcid.org/0000-0002-1441-6512>),
  Jaroslaw Chilimoniuk [ctb] (ORCID:
    <https://orcid.org/0000-0001-5467-018X>)
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>