Package: biogram
Type: Package
Title: N-Gram Analysis of Biological Sequences
Version: 1.6.3
LazyData: true
Date: 2020-03-31
Authors@R: c(
    person("Michal", "Burdukiewicz",
    email = "michalburdukiewicz@gmail.com",
    comment = c(ORCID = "0000-0001-8926-582X"),
    role = c("cre", "aut")),
    person("Piotr", "Sobczyk",
    role = "aut"),
    person("Chris", "Lauber",
    role = "aut"),
    person("Dominik", "Rafacz",
    role = "aut"),
    person("Katarzyna", "Sidorczuk",
    role = "ctb",
    comment = c(ORCID = "0000-0001-6576-9054")))
Description: Tools for extraction and analysis of various n-grams
        (k-mers) derived from biological sequences (proteins or nucleic
        acids). Contains QuiPT (quick permutation test) for fast
        feature-filtering of the n-gram data.
License: GPL-3
URL: https://github.com/michbur/biogram
BugReports: https://github.com/michbur/biogram/issues
VignetteBuilder: knitr
Depends: R (>= 3.0.0), slam
Imports: combinat, entropy, partitions, Matrix, pbapply
Suggests: ggplot2, knitr, testthat, rmarkdown
NeedsCompilation: no
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: libgmp3-dev
Repository: https://michbur.r-universe.dev
Date/Publication: 2024-08-30 20:56:22 UTC
RemoteUrl: https://github.com/michbur/biogram
RemoteRef: HEAD
RemoteSha: c06cd55946dae1adc812ede4a558d16ef4f10d10
Packaged: 2026-06-21 07:47:03 UTC; root
Author: Michal Burdukiewicz [cre, aut] (ORCID:
    <https://orcid.org/0000-0001-8926-582X>),
  Piotr Sobczyk [aut],
  Chris Lauber [aut],
  Dominik Rafacz [aut],
  Katarzyna Sidorczuk [ctb] (ORCID:
    <https://orcid.org/0000-0001-6576-9054>)
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>