Package: signalHsmm 1.5

signalHsmm: Predict Presence of Signal Peptides

Predicts the presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed from both the command line and GUI.

Authors:Michal Burdukiewicz [cre, aut], Piotr Sobczyk [aut], Jaroslaw Chilimoniuk [ctb]

signalHsmm_1.5.tar.gz
signalHsmm_1.5.zip(r-4.5)signalHsmm_1.5.zip(r-4.4)signalHsmm_1.5.zip(r-4.3)
signalHsmm_1.5.tgz(r-4.5-x86_64)signalHsmm_1.5.tgz(r-4.5-arm64)signalHsmm_1.5.tgz(r-4.4-x86_64)signalHsmm_1.5.tgz(r-4.4-arm64)signalHsmm_1.5.tgz(r-4.3-x86_64)signalHsmm_1.5.tgz(r-4.3-arm64)
signalHsmm_1.5.tar.gz(r-4.5-noble)signalHsmm_1.5.tar.gz(r-4.4-noble)
signalHsmm_1.5.tgz(r-4.4-emscripten)signalHsmm_1.5.tgz(r-4.3-emscripten)
signalHsmm.pdf |signalHsmm.html✨
signalHsmm/json (API)

# Install 'signalHsmm' in R:
install.packages('signalHsmm', repos = c('https://michbur.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/michbur/signalhsmm/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

cpp

3.48 score 2 stars 7 scripts 216 downloads 1 mentions 10 exports 39 dependencies

Last updated 5 years agofrom:7a9a3a7236. Checks:4 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 01 2025
R-4.5-win-x86_64NOTEFeb 01 2025
R-4.5-mac-x86_64NOTEFeb 01 2025
R-4.5-mac-aarch64NOTEFeb 01 2025
R-4.5-linux-x86_64NOTEFeb 01 2025
R-4.4-win-x86_64NOTEFeb 01 2025
R-4.4-mac-x86_64NOTEFeb 01 2025
R-4.4-mac-aarch64NOTEFeb 01 2025
R-4.3-win-x86_64OKFeb 01 2025
R-4.3-mac-x86_64OKFeb 01 2025
R-4.3-mac-aarch64OKFeb 01 2025

Exports:add_k_mer_stateduration_viterbifind_nhcgui_signalHsmmis_proteinpred2dfread_txtread_uniprotrun_signalHsmmtrain_hsmm

Dependencies:ade4base64encbslibcachemclicommonmarkcrayondigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclemagrittrMASSmemoisemimenlmepixmappromisesR6rappdirsRcppRcppArmadillorlangsasssegmentedseqinrshinysourcetoolsspwithrxtable