Package: signalHsmm 1.5

signalHsmm: Predict Presence of Signal Peptides

Predicts the presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed from both the command line and GUI.

Authors:Michal Burdukiewicz [cre, aut], Piotr Sobczyk [aut], Jaroslaw Chilimoniuk [ctb]

signalHsmm_1.5.tar.gz
signalHsmm_1.5.zip(r-4.7-x86_64)signalHsmm_1.5.zip(r-4.6-x86_64)signalHsmm_1.5.zip(r-4.5-x86_64)
signalHsmm_1.5.tgz(r-4.6-x86_64)signalHsmm_1.5.tgz(r-4.6-arm64)signalHsmm_1.5.tgz(r-4.5-x86_64)signalHsmm_1.5.tgz(r-4.5-arm64)
signalHsmm_1.5.tar.gz(r-4.7-arm64)signalHsmm_1.5.tar.gz(r-4.7-x86_64)signalHsmm_1.5.tar.gz(r-4.6-arm64)signalHsmm_1.5.tar.gz(r-4.6-x86_64)
signalHsmm_1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
signalHsmm/json (API)

# Install 'signalHsmm' in R:
install.packages('signalHsmm', repos = c('https://michbur.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/michbur/signalhsmm/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

3.48 score 2 stars 9 scripts 253 downloads 1 mentions 10 exports 39 dependencies

Last updated from:7a9a3a7236. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE139
linux-devel-x86_64NOTE134
source / vignettesOK190
linux-release-arm64NOTE136
linux-release-x86_64NOTE129
macos-release-arm64NOTE161
macos-release-x86_64NOTE209
macos-oldrel-arm64NOTE127
macos-oldrel-x86_64NOTE246
windows-develNOTE118
windows-releaseNOTE100
windows-oldrelNOTE101
wasm-releaseOK123

Exports:add_k_mer_stateduration_viterbifind_nhcgui_signalHsmmis_proteinpred2dfread_txtread_uniprotrun_signalHsmmtrain_hsmm

Dependencies:ade4base64encbslibcachemclicommonmarkdigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclemagrittrMASSmemoisemimenlmeotelpixmappromisesR6rappdirsRcppRcppArmadillorlangsasssegmentedseqinrshinysourcetoolsspwithrxtable